- Xue, Y. and X.-J. Zhou, 1989: Attenuation of sound in the detection of temperature mixing coefficient in atmospheric boundary layer. Acta Meteo. Sci. B, 1.
- Xue, Y., X.-J. Zhou, P.-C. Yang, 1990: Bifurcation and stability in a model of dry convection in a shearing environment. China Sci. B, 6, 664-672.
- Wang, B. and Y. Xue, 1992: Behavior of a moist Kelvin wave packet with nonlinear heating. J. Atmos. Sci., 49, 549-559.
- Xue, Y., M. A. Cane, S. E. Zebiak, and B. Blumenthal, 1994: On the prediction of ENSO: a study with a low-order Markov model. Tellus, 46A, 512-528.
- Xue, Y., M. A. Cane, and S. E. Zebiak, 1997a: Predictability of a coupled model of ENSO using singular vector analysis. Part I: Optimal growth in seasonal background and ENSO cycles. Mon. Wea. Rev., 125, 2043-2056.
- Xue, Y., M. A. Cane, S. E. Zebiak, and T. N. Palmer, 1997b: Predictability of a coupled model of ENSO using singular vector analysis. Part II: Optimal growth and forecast skill. Mon. Wea. Rev., 125, 2057-2073.
- Tziperman, E., M. A. Cane, S. E. Zebiak, Y. Xue and B. Blumenthal, 1998: Locking of El Nino's peak time to the end of the calendar year in the delayed oscillator picture of ENSO. J. Climate, 11, 2191-2199.
- Xue, Y., A. Leetmaa, and M. Ji, 2000: ENSO prediction with Markov models: The impact of sea level. J. Climate, 13, 849-871.
- Higgins, R. W., A. Leetmaa, Y. Xue and A. Barnston, 2000: Dominant factors influencing the seasonal predictability of United States precipitation and surface air temperature. J. Climate, 13, 3994-4017.
- Xue, Y.,and A. Leetmaa, 2000: Forecast of tropical Pacific SST and sea level using a Markov model . Geophys. Res. Lett., 27, 2701-2704.
- Reynolds, R. W., D. Behringer, M. Ji, A. Leetmaa, C. Maes, F. Vossepoel and Y. Xue, 2000: Analyzing the 1993-1998 interannual variability of NCEP model ocean simulations: The contribution of TOPEX/Poseidon observations, In Satellites, Oceanography and Society , edited by D. Halpern, Elsevier Science Publishers, New York, 2000.
- Xue, Y., T. M. Smith, and R. W. Reynolds, 2003: Interdecadal changes of 30-yr SST normals during 1871-2000. J. Climate, 16, 1601-1612.
- Seo, K.-H., and Y. Xue, 2005: MJO-related oceanic Kelvin waves and the ENSO cycle: A study with the NCEP Global Ocean Data Assimilation System. . Geophys. Res. Lett., 32, L07712, doi:10.1029/2005GL022511.
- Zhang, R-H, A.J. Busalacchi and Y. Xue, 2007: Decadal change in the relationship between the oceanic entrainment temperature and thermocline depth in the far western tropical Pacific . Geophys. Res. Lett., 34, L23612, doi:10.1029/2007GL032119.
- Zhang, Q., A. Kumar, Y. Xue, W. Wang, and F. Jin, 2007: Analysis of the ENSO Cycle in NCEP Coupled Forecast Model. J. Climate, 16, 1265-1284.
- Huang, B., Y. Xue, and D. Behringer, 2008: Impacts of Argo salinity in NCEP Global Ocean Data Assimilation System: The tropical Indian Ocean. J. Geophys. Res. , 113, doi:10.1029/2007JC004388.
- Lawrimore , J. H. and others, 2008: State of the climate in 2007. Bull. Amer. Meteor. Soc. , 89,
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